Package: NIPTeR 1.0.3

NIPTeR: Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing

Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing.

Authors:Dirk de Weerd, Lennart Johansson

NIPTeR_1.0.3.tar.gz
NIPTeR_1.0.3.zip(r-4.5)NIPTeR_1.0.3.zip(r-4.4)NIPTeR_1.0.3.zip(r-4.3)
NIPTeR_1.0.3.tgz(r-4.4-any)NIPTeR_1.0.3.tgz(r-4.3-any)
NIPTeR_1.0.3.tar.gz(r-4.5-noble)NIPTeR_1.0.3.tar.gz(r-4.4-noble)
NIPTeR_1.0.3.tgz(r-4.4-emscripten)NIPTeR_1.0.3.tgz(r-4.3-emscripten)
NIPTeR.pdf |NIPTeR.html✨
NIPTeR/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/ljohansson/nipter/issues

On CRAN:

18 exports 1.33 score 32 dependencies 2 mentions 4 scripts 177 downloads

Last updated 5 years agofrom:750f275537. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:add_samples_controlgroupas_control_groupbin_bam_samplecalculate_ncv_scorecalculate_z_scorechi_correctchrfractionsdiagnose_control_groupgc_correctgetcontrolchromosomesgetfractionscontrolgroupgetreadscontrolgroupmatch_control_groupperform_regressionprepare_ncvremove_duplicates_controlgroupremove_sample_controlgroupretrieve_fractions_of_interest

Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopscodetoolscpp11crayoncurlformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitelambda.rmimeopensslR6RhtslibRsamtoolsS4VectorssetssnowsysUCSC.utilsXVectorzlibbioc