title: "NIPTeR: fast and accurate trisomy prediction in non-invasive prenatal testing"author: "Lennart F. Johansson & Hendrik A. de Weerd"date: "r Sys.Date()"output: rmarkdown::html_vignettevignette: >%\VignetteIndexEntry | NIPTeR package | Introduction | Functions | Loading BAM files | Variation reduction functions | GC correction | Match control group | Chi-squared based variation reduction | Trisomy prediction functions | Z-score | Regression based Z-score | Normalized Chromosome Value | prepare_ncv | calculate_ncv | as_control_group | add_samples_controlgroup | remove_duplicates_controlgroup | remove_sample_controlgroup | diagnose_control_group | Control group | Gather relevant data from the objects on the workspace